Publications

Osborne OG, Fell FG, Atkins H, van Tol J, Phillips D, Herrera-Alsina L, Mynard P, Bocedi G, Gubry-Rangin C, Lancaster LT, Creer S, Nangoy M, Fahri F, Lupiyaningdyah P, Sudiana IM, Juliandi B, Travis JMJ, Papadopulos AST & Algar AC. Fauxcurrence: simulating multi-species occurrences for null models in species distribution modelling and biogeography. Ecography, 2022, e05880 (pdf)

Dunning LT, Olofsson JK, Papadopulos AST, Hibdige SGS, Hidalgo O, Leitch IJ, Baleeiro PC, Ntshangase S, Barker N, Jobson RW. Hybridisation and chloroplast capture between distinct Themeda triandra lineages in Australia. Molecular Ecology. 31, 5846-5860 (pdf)

Herrera‐Alsina L, Algar AC, Lancaster LT, Ornelas JF, Bocedi G, Papadopulos AST, Gubry‐Rangin C, Osborne OG, Mynard P, Sudiana IM, Lupiyaningdyah P, Juliandi B, Travis JMJ. The missing link in biogeographic reconstruction: Accounting for lineage extinction rewrites history. Journal of Biogeography. 49, 1941-1951 (pdf)

Struebig MJ, Aninta SG, Beger M, Bani A, Barus H, Brace S, Davies ZG, De Brauwer M, Diele K, Djakiman C, Djamaluddin R, Drinkwater R, Dumbrell A, Evans D, Fusi M, Herrera-Alsina L, Iskandar DT, Jompa J, Juliandi B, Lancaster LT, Limmon G, Lo MGY, Lupiyaningdyah P, McCannon M, Meijaard E, Mitchell SL, Mumbunan S, O’Connell D, Osborne OG, Papadopulos AST, Rahajoe JS, Rossiter SJ, Rustiami H, Salzmann U, Sudiana IM, Sukara E, Tasirin JS, Tjoa A, Travis JMJ, Trethowan L, Trianto A, Utteridge T, Voigt M, Winarni N, Zakaria Z, Edwards DP, Frantz L, Supriatna J.  Safeguarding imperiled biodiversity and evolutionary processes in the Wallacea center of endemism. BioScience. 72, 1118-1130 (pdf)

Antonelli A, Smith RJ, Perrigo AL […] Papadopulos AST […] Ziegler T, Zizka A, Ralimanana H (80 authors). Madagascar’s extraordinary biodiversity: Evolution, distribution, and use. Science. 378: eabf0869 (pdf)

Ralimanana H, Perrigo AL, Smith RJ […] Papadopulos AST […], Ziegler T, Zizka A, Antonelli A (80 authors). Madagascar’s extraordinary biodiversity: Threats and opportunities. Science. 378: eadf1466. (pdf)

Papadopulos AST, Helmstetter AJ, Osborne OG, Comeault AA, Wood DP, Straw EA, Mason LD, Fay MF, Parker J, Dunning LT, Foote AD, Smith RJ & Lighten J. Rapid Parallel Adaptation to Anthropogenic Heavy Metal Pollution. Molecular Biology and Evolution, 38, 4475-4492 (pdf)

Helmstetter AJ, Cable S, Rakotonasolo F, Rabarijaona R, Rakotoarinivo M, Eiserhardt WL, Baker WJ & Papadopulos AST. The Demographic History of Micro-endemics: Have Rare Species Always Been Rare? Proceedings of the Royal Society B, 288, 20210957 (pdf)

Hagl PA, Gargiulo R, Fay MF, Solofondranohatra C, Salmona J, Suescun U,  Rakotomalala N, Lehmann CER, Besnard G, Papadopulos AST & Vorontsova MS. Geographical structure of genetic diversity in Loudetia simplex (Poaceae) in Madagascar and South Africa. Botanical Journal of the Linnean Society, 196, 81–99 (pdf)

Herrera-Alsina L, Algar AC, Bocedi G, Gubry-Rangin C, Lancaster LT, Mynard P, Osborne OG, Papadopulos AST, Creer S, Nangoy M, Fahri F, Lupiyaningdyah P, Sudiana IM, Juliandi B & Travis JMJ. Ancient geological dynamics impact neutral biodiversity accumulation and are detectable in phylogenetic reconstructions. Global Ecology and Biogeography (pdf)

Pérez-Escobar OA, Bellot S, Przelomska NAS, Flowers JM, Nesbitt M, Ryan P, Gutaker RM, Gros-Balthazard M, Wells T, Kuhnhäuser BG, Schley R, Bogarín D, Dodsworth S, Diaz R, Lehmann M, Petoe P, Eiserhardt WL, Preick M, Hofreiter M, Hajdas I, Purugganan M, Antonelli A, Gravendeel B, Leitch IJ, Torres Jimenez MF, Papadopulos AST, Chomicki G, Renner SS, Baker WJ. Molecular clocks and archeogenomics of a late period Egyptian date palm leaf reveal introgression from wild relatives and add timestamps on the domestication. Molecular Biology and Evolution, 38, 4475-4492 (pdf)

Wong ELY, Nevado B, Osborne OG, Papadopulos AST, Bridle JR, Hiscock SJ, Filatov DA. Strong divergent selection at multiple loci in two closely related species of ragworts adapted to high and low elevations on Mount Etna. Molecular Ecology. 29, 394-412 (abstract)

Dehasque M, Ávila‐Arcos MC, Díez‐del‐Molino D, Fumagalli M, Guschanski K, Lorenzen ED, Malaspinas AS, Marques‐Bonet T, Martin MD, Murray GGR, Papadopulos AST, Therkildsen NO, Wegmann D, Dalén L, Foote AD. Inference of natural selection from ancient DNA. Evolution Letters  4, 94-108 (pdf)

Helmstetter AJ, Papadopulos AST, Igea J & Van Dooren TJM. Trait evolution and historical biogeography shape assemblages of annual killifish. Journal of Biogeography. 47, 1955-1965 (pdf)

Papadopulos AST, Igea J, Dunning LT, Osborne OG, Quan X, Pellicer J, Turnbull C, Hutton I, Baker WJ, Butlin RK & Savolainen V. Ecological speciation in sympatric palms: 3. Genetic map reveals genomic islands underlying species divergence in Howea. Evolution. 73, 1986-1995 (abstract)

Papadopulos AST, Igea J, Smith TP, Hutton I, Baker WJ, Butlin RK & Savolainen V. Ecological speciation in sympatric palms: 4. Demographic analyses support speciation of Howea in the face of high gene flow. Evolution. 73, 1996-2002 (abstract)

Parker J, Helmstetter AJ, Crowe J, Iacona J, Devey D & Papadopulos AST. Rapid, raw-read reference and identification (R4IDs): A flexible platform for rapid generic species ID using long-read sequencing technology. bioRxiv (pdf)

Parker J, Helmstetter AJ, Devey DS & Papadopulos AST. Field-based species identification of closely-related plants using real-time nanopore sequencing. Scientific Reports. 7, 8345 (pdf)

Lighten J, Papadopulos AST, Mohammed RS, Ward BJ, Paterson I, Baillie L, Bradbury IR, Hendry AP, Bentzen P & van Oosterhout C. Evolutionary genetics of immunological supertypes solves Red Queen Paradox. Nature Communications. 8, 1294 (pdf)

Filatov D, Osborne O & Papadopulos AST. (2016) Demographic history of speciation in Senecio altitudinal hybrid zone on Mt. Etna. Molecular Ecology. 24: 2467-2481. (abstract)

Dunning LT, Hipperson H, Baker WJ, Butlin RK, Devaux C, Hutton I, Igea J, Papadopulos AST, Quan X, Smadja CM, Turnbull CGN & Savolainen V. (2016) Ecological speciation in sympatric palms: 1. Gene expression, selection and pleiotropy. Journal of Evolutionary Biology. 29: 1472-1487. (pdf)

Hipperson H, Dunning LT, Baker WJ, Butlin RK, Hutton I, Papadopulos AST, Smadja CM, Wilson TC, Devaux C & Savolainen V. (2016) Ecological speciation in sympatric palms: 2. Pre- and post-zygotic isolation. Journal of Evolutionary Biology. 29: 2143-2156. (pdf)

Igea J, Bogarín D, Papadopulos AST & Savolainen V. (2015) A Comparative analysis of island floras challenges taxonomy-based biogeographical models of speciation. Evolution 69: 482-491. (pdf)

Valente LM*, Britton AW*, Powell MP, Papadopulos AST, Burgoyne PM, Savolainen V. (2014) Correlates of hyperdiversity in Southern African ice plants (Aizoaceae). Botanical Journal of the Linnean Society. 174: 110-129. (pdf)

Papadopulos AST, Price Z, Devaux C, Hipperson H, Smadja CM, Hutton I, Baker WJ, Butlin RK, & Savolainen V. (2013) A comparative analysis of the mechanisms underlying speciation on Lord Howe Island. Journal of Evolutionary Biology 26: 733-745. (pdf)

Papadopulos AST, Baker WJ & Savolainen V. (2013) Sympatric speciation of island plants: the natural laboratory of Lord Howe Island. In Speciation: Natural Processes, Genetics and Biodiversity (Michalak P, Ed).

Bezeng BS, Savolainen V, Yessoufou K, Papadopulos AST, Maurin O & Van Der Bank M. (2013) A phylogenetic approach towards understanding the drivers of plant invasiveness on Robben Island, South Africa. Botanical Journal of the Linnean Society 172: 142-152. (abstract)